Title | Genomics of 1 million parent lifespans implicates novel pathways and common diseases and distinguishes survival chances. |
Publication Type | Journal Article |
Year of Publication | 2019 |
Authors | Timmers, PRhj, Mounier, N, Lall, K, Fischer, K, Ning, Z, Feng, X, Bretherick, AD, Clark, DW, Shen, X, Esko, T, Kutalik, Z, Wilson, JF, Joshi, PK |
Corporate Authors | eQTLGen Consortium |
Journal | Elife |
Volume | 8 |
Pagination | e39856 |
ISSN Number | 2050-084X |
Keywords | Age Factors, Aged, Bayes Theorem, Disease, DNA Methylation, Female, Genetic Loci, Genome-Wide Association Study, Genomics, Humans, Longevity, Male, Middle Aged, Multifactorial Inheritance, Parents, Polymorphism, Single Nucleotide, Risk Factors, Sex Characteristics, Signal Transduction, Survival Analysis |
Abstract | We use a genome-wide association of 1 million parental lifespans of genotyped subjects and data on mortality risk factors to validate previously unreplicated findings near , , , , , and 13q21.31, and identify and replicate novel findings near , , and . We also validate previous findings near 5q33.3/ and , whilst finding contradictory evidence at other loci. Gene set and cell-specific analyses show that expression in foetal brain cells and adult dorsolateral prefrontal cortex is enriched for lifespan variation, as are gene pathways involving lipid proteins and homeostasis, vesicle-mediated transport, and synaptic function. Individual genetic variants that increase dementia, cardiovascular disease, and lung cancer - but not other cancers - explain the most variance. Resulting polygenic scores show a mean lifespan difference of around five years of life across the deciles. Editorial note: This article has been through an editorial process in which the authors decide how to respond to the issues raised during peer review. The Reviewing Editor's assessment is that all the issues have been addressed (see decision letter). |
DOI | 10.7554/eLife.39856 |
Citation Key | 12132 |
PubMed ID | 30642433 |
PubMed Central ID | PMC6333444 |
Grant List | MC_PC_17228 / MRC_ / Medical Research Council / United Kingdom 204979/Z/16/Z / / Edinburgh Clinical Academic Track / International 2014-00371 / / Svenska Forskningsrådet Formas / International PUT 1665 / / Estonian Research Competency Council / International R01 HL105756 / HL / NHLBI NIH HHS / United States / WT_ / Wellcome Trust / United Kingdom MC_QA137853 / MRC_ / Medical Research Council / United Kingdom 31003A_169929 / / Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung / International R01 DK075787 / DK / NIDDK NIH HHS / United States 2017-02543 / / Svenska Forskningsrådet Formas / International PhD Training Fellowship for Clinicians / WT_ / Wellcome Trust / United Kingdom 51RTP0_151019 / / SystemsX.ch / International MC_UU_00007/10 / MRC_ / Medical Research Council / United Kingdom DTP in Precision Medicine MR/N013166/1,HGU QTL in health and disease / MRC_ / Medical Research Council / United Kingdom |