Genomics of 1 million parent lifespans implicates novel pathways and common diseases and distinguishes survival chances.

TitleGenomics of 1 million parent lifespans implicates novel pathways and common diseases and distinguishes survival chances.
Publication TypeJournal Article
Year of Publication2019
AuthorsTimmers, PRhj, Mounier, N, Lall, K, Fischer, K, Ning, Z, Feng, X, Bretherick, AD, Clark, DW, Shen, X, Esko, T, Kutalik, Z, Wilson, JF, Joshi, PK
Corporate AuthorseQTLGen Consortium
JournalElife
Volume8
Paginatione39856
ISSN Number2050-084X
KeywordsAge Factors, Aged, Bayes Theorem, Disease, DNA Methylation, Female, Genetic Loci, Genome-Wide Association Study, Genomics, Humans, Longevity, Male, Middle Aged, Multifactorial Inheritance, Parents, Polymorphism, Single Nucleotide, Risk Factors, Sex Characteristics, Signal Transduction, Survival Analysis
Abstract

We use a genome-wide association of 1 million parental lifespans of genotyped subjects and data on mortality risk factors to validate previously unreplicated findings near , , , , , and 13q21.31, and identify and replicate novel findings near , , and . We also validate previous findings near 5q33.3/ and , whilst finding contradictory evidence at other loci. Gene set and cell-specific analyses show that expression in foetal brain cells and adult dorsolateral prefrontal cortex is enriched for lifespan variation, as are gene pathways involving lipid proteins and homeostasis, vesicle-mediated transport, and synaptic function. Individual genetic variants that increase dementia, cardiovascular disease, and lung cancer - but not other cancers - explain the most variance. Resulting polygenic scores show a mean lifespan difference of around five years of life across the deciles.

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DOI10.7554/eLife.39856
Citation Key12132
PubMed ID30642433
PubMed Central IDPMC6333444
Grant ListMC_PC_17228 / MRC_ / Medical Research Council / United Kingdom
204979/Z/16/Z / / Edinburgh Clinical Academic Track / International
2014-00371 / / Svenska Forskningsrådet Formas / International
PUT 1665 / / Estonian Research Competency Council / International
R01 HL105756 / HL / NHLBI NIH HHS / United States
/ WT_ / Wellcome Trust / United Kingdom
MC_QA137853 / MRC_ / Medical Research Council / United Kingdom
31003A_169929 / / Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung / International
R01 DK075787 / DK / NIDDK NIH HHS / United States
2017-02543 / / Svenska Forskningsrådet Formas / International
PhD Training Fellowship for Clinicians / WT_ / Wellcome Trust / United Kingdom
51RTP0_151019 / / SystemsX.ch / International
MC_UU_00007/10 / MRC_ / Medical Research Council / United Kingdom
DTP in Precision Medicine MR/N013166/1,HGU QTL in health and disease / MRC_ / Medical Research Council / United Kingdom